How can setup WordPress in a directory (folder)
and also how can I create a secondary db in a current WordPress installation
WordOps does not support extra databases or WP installed in directory right now.
Thank you portofacil
In case it helps anyone, this was a problem for me when we migrated from EE to WO. I reverted the /etc/nginx/sites-available/$SITE.conf file from /var/lib/wo-backup/nginx/sites-available/$SITE.conf and it works fine.
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